rs37228628 SNP Detail

Summary

• ID
  rs37228628
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127541370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAGCCCC TAGATGAGGA
  GTCTCTGATC AAGAACCTCC AACTCCGTTA TGAAAACAAA GAGATTTATG TGAGCTTGCC
  ATGGGAGCCA GGCTGTGGGG GTACCCAGGG GGTTCCAGTA TTCCTCCTGC CAGGCTCATC
  TGTCTCACCC TCCTTCTGAC CCCAGACATA CATTGGGAAT GTGGTGATCT CAATGAACCC
  Y
  TACGAGCAGC TTCCCATCTA TGGACCAGAG TTCATTGCCA AATACCGGGA CTATACTTTC
  TATGAGCTGA AGCCTCACAT GTGAGTAAAG GGAACCAGAG GAGGGCTGAC AAATGTCCAT
  GAAGCATCCT CCTCTCCCCC TCCCCGGTCT TTCCCCAAAG GAGCTCCTCC AGCATCCCTC
  TTCCCCTGAG AATCCTTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50947139	NES14150430	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37228628					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50947139	NES14150430	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127541370 () rs orientation: forward

Symbol	Name	Function Class
Myo1a	myosin IA	within coordinates
Rr213603	regulatory region 213603	370 bp distal
Rr221966	regulatory region 221966	1075 bp proximal
Rr226492	regulatory region 226492	1832 bp proximal
Tssr3395	transcription start site region 3395	210 bp downstream
Tssr96244	transcription start site region 96244	1984 bp downstream
Tssr96245	transcription start site region 96245	1949 bp downstream
Tssr96246	transcription start site region 96246	1293 bp upstream
Tssr96247	transcription start site region 96247	1311 bp upstream