rs37230850 SNP Detail

Summary

• ID
  rs37230850
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84391457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACTCACAGA GATCCACCTG CATCTGCATT CACAGTGCTG
  GGATTAAAGG TGTGCGTCAC CACTCCCTGC TCTCCCTGCT TTCTTGACAC CAGAAATGCA
  R
  AATGGCAATA ATGCCTTCCC TTGGGCATCT CCCACCTGAG GGGAGCCCTC TCAGTTGGGG
  TCTGTTACCT CCCATTTGAG TGGACACTGC TGTGAACCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss51971831	NES14985917	PERLEGEN	MM_PANEL2	f	SNP			A		G		A	G
ss145359578	ENSMUSSNP1312421	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss322745392	CHEV_8_86188727	CHEVERUD	SCREENING_POP	f	SNP						A			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs37230850					SNP	A	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51971831	NES14985917	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84391457 () rs orientation: forward

Symbol	Name	Function Class
Gipc1	GIPC PDZ domain containing family, member 1	134 bp downstream
Pkn1	protein kinase N1	1708 bp downstream
Ptger1	prostaglandin E receptor 1 (subtype EP1)	1850 bp upstream
Rr666278	regulatory region 666278	41 bp proximal
Rr666279	regulatory region 666279	1360 bp proximal
Rr666280	regulatory region 666280	1861 bp proximal
Tssr78279	transcription start site region 78279	1806 bp upstream
Tssr78280	transcription start site region 78280	1879 bp upstream
Tssr78281	transcription start site region 78281	1999 bp upstream