rs37233604 SNP Detail

Summary

• ID
  rs37233604
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:18708179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTTAGCC AGCATGGCAT
  GGTCCACTTT GCCCTGCTGG AGTGGAACAC TGCAGGAGAG AGAGAGAGAG ACAGAGAGAA
  GCCCGTAGTC ATACGTCTTC ATGGGCTCCT GGTTTAAAGA TACTGCATAA ACAACTGTCC
  AATAAATCTC TGCCATTTCT CATATGGGGT GAGTATATTT CCCTTCTTCT TTAGAAGCGT
  Y
  TATGAAGGAC TGTGTAATGG TCATTATTTA TAGCAAACCA CATAGACAGA AATCTTAGAA
  TATCTTTAGG GACTTGCTGG TGTCTGTGAA ATAGGTATTC CTATTGTTTA TCCTCTGCTT
  TTTGTCTATG ACCCGAGGCT CCAGAAGAAA AAGAACTGAC CACATAAAAG GCCACTTGCT
  TTAGAAGTAA GTGCCATGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
ss50685049	NES13607306	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
rs37233604					SNP	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50685049	NES13607306	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:18708179 () rs orientation: forward

Symbol	Name	Function Class
Gm23238	predicted gene, 23238	1926 bp upstream
Gm50202	predicted gene, 50202	1058 bp downstream
Gm59201	predicted gene, 59201	within coordinates
Tssr155454	transcription start site region 155454	198 bp downstream
Tssr155455	transcription start site region 155455	166 bp downstream
Tssr155456	transcription start site region 155456	126 bp downstream
Tssr155457	transcription start site region 155457	614 bp upstream
Tssr155458	transcription start site region 155458	1925 bp upstream