rs3723439 SNP Detail

Summary

• ID
  rs3723439
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:100142339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGG GTAAGGGGTC GCGATCCAGA
  R
  CAGCTGGCCA GTCAGTCTGC CTGTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5099744	WI_WGS_7_90309807	WI	MOUSE	f	SNP			A			G
ss47082938	NES11612357	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G		G	G	A	A		G	G	A	G		G
ss322348740	CHEV_7_107641641	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3723439					SNP	A	A	A	A	G	G	G	G	A	A	A	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47082938	NES11612357	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:100142339 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19484	CpG island 19484	within coordinates
Gm72028	predicted gene, 72028	within coordinates
Rr400469	regulatory region 400469	17 bp upstream
Rr652131	regulatory region 652131	113 bp distal
Rr652132	regulatory region 652132	692 bp distal
Rr652133	regulatory region 652133	within coordinates
Tssr68123	transcription start site region 68123	187 bp upstream
Tssr68124	transcription start site region 68124	217 bp upstream
Tssr68125	transcription start site region 68125	638 bp upstream
Tssr68126	transcription start site region 68126	697 bp upstream
Tssr68127	transcription start site region 68127	807 bp upstream
Tssr68128	transcription start site region 68128	912 bp upstream
Tssr68129	transcription start site region 68129	1137 bp upstream
Tssr68130	transcription start site region 68130	1759 bp upstream
Ucp2	uncoupling protein 2 (mitochondrial, proton carrier)	226 bp upstream