rs37236657 SNP Detail

Summary

• ID
  rs37236657
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151958441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATATCACT CCTAAGATAG
  GCCCATTCTG CCCATACTAC TGGGCAACGG ACGTGAATAT TTTCCTTTCA GATAATATTT
  TTAGGCTAGC CACTATTAAT AAGTTTATAC TGTACTAAGT ATTTTAATTC AGCAACATCC
  TGATTAGTTC TCGTTTGTTC TGTTAGTTAC AGAAATAACC CCCAGTGTAG CATTTAGCAC
  M
  TACCTGCTCC GCTCTTTTTG CTAATTCGCG CTGTATTTTC CTCTTTTCTA ACAGATCCTG
  CTCAATTCTG CGTTTTCTTT CTTCTTCTGT TCTCTTTCTT TGTTCTTCCT GTCTGTGTTT
  CTCCATTTCA TCGAATTTAC CTTTAACTGT CCCTAAACAC ACACACAAAC AAAACAAAAA
  AAAACCCTTG GATATTTGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51060236	NES13426080	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37236657					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060236	NES13426080	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151958441 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm43185	predicted gene 43185			1 bp upstream
Nexn	nexilin			Intron
				Splice-Site
Tssr1100	transcription start site region 1100			66 bp upstream
Tssr32404	transcription start site region 32404			804 bp upstream
Tssr36193	transcription start site region 36193			24 bp downstream
Tssr36194	transcription start site region 36194			114 bp downstream
Tssr36195	transcription start site region 36195			266 bp downstream
Tssr36196	transcription start site region 36196			280 bp downstream
Tssr36197	transcription start site region 36197			317 bp downstream
Tssr36198	transcription start site region 36198			876 bp downstream
Tssr36199	transcription start site region 36199			891 bp downstream
Tssr36200	transcription start site region 36200			915 bp downstream
Tssr36201	transcription start site region 36201			951 bp downstream
Tssr36202	transcription start site region 36202			997 bp downstream