rs3723811 SNP Detail

Summary

• ID
  rs3723811
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:42740868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGCCGCC ATCTTTCAGA
  AAGTTTCCCT TATGAAGTAC ATGAGTGAGA GTGATGTTTT GGCCGCTACA TTTATAGATG
  AGGTAACTGG ACTCTGCTGC GCTGTTGTGA GGTTTTGGGA ATCTGTGCAT TCCTACTGCC
  AGAGGCAGAG AACAAGGACC AGCCTCGCTT TCTGCAGAAG TCACAACAGG GAGGCATGCA
  R
  CTGGCTGTAA GTGAGAACAC CAACATGCCA GGACAAGAGG CCTCAGTGTG CTCTGAGAGG
  TGGCAGTGCT GGCTGCCCAG ACCCCTGACG GTGACTCAGC TTTTGAGAAC TGAGTATTTG
  GTGACAAAGC CTTTTCCCTT TCTCTCTCCC CGTGCTGATT GTTTTATGGT AGAGAGCTCA
  TTGGTTCAAA ACAGATGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss5100116	WI_WGS_10_42951227	WI	MOUSE	f	SNP	A							G
ss38556134	mCV23431438	ABI	CRAMUS_MOUSE	f	SNP	A	A								G
ss47857599	NES11971013	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G		G	G	G	A	G	G	G
ss147083933	ENSMUSSNP406082	ENSEMBL	ENSEMBL_Sanger	f	SNP		A								G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs3723811					SNP	A	A	G	G	G	A	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47857599	NES11971013	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42740868 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1495	CpG island 1495	415 bp distal
Gm34006	predicted gene, 34006	within coordinates
Gm66346	predicted gene, 66346	within coordinates
Scml4	Scm polycomb group protein like 4	within coordinates
Tssr97454	transcription start site region 97454	872 bp upstream
Tssr97455	transcription start site region 97455	632 bp upstream