rs37238299 SNP Detail

Summary

• ID
  rs37238299
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:68469515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATACACT TCACAAAATT
  ACAACCAACC AACCAACCAA CCAACAAACA TGAGCGTACA GAGATCCTGG ATAGCCAAAG
  CAATCTTGAG GAAAAAAAAA AAAACCAACC CACACCCCCC AAACCAACCA AACAAACGAT
  TCTGGAGGTA TATGACCATG CGTGTTTTAA AGCTGAAATC TTGAAGCGTC TATAGCATCT
  Y
  GAAGGAAGGA ACCATTCCTG GAGCAGGGTT CCTCAGGTGG GCTGCCAGCC TTCAAATCCT
  ATGCTTCCCA AAGTTAGAAA CTTGATCTTG CTGTATTCCC TCCTCCTCCC CTCCCCTCCC
  CCTCTTACCC CTCTTCCCCT CCTCCTCTCC CCTCTCTTCC CTCTCCCTCA CCCCACCCTC
  TCTCTCATCC GGGAATAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50460664	NES13443586	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37238299					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50460664	NES13443586	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:68469515 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10187	CpG island 10187	984 bp proximal
Mc5r	melanocortin 5 receptor	1060 bp upstream
Rr393851	regulatory region 393851	within coordinates
Tssr151786	transcription start site region 151786	1060 bp upstream
Tssr151787	transcription start site region 151787	1101 bp upstream