rs3723884 SNP Detail

Summary

• ID
  rs3723884
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31241611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGACT CTTAGAGTTG CCTGCAGAAG
  R
  AAAAAAATTC CCCTCACCTC CAGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss5100189	WI_WGS_16_31207069	WI	MOUSE	f	SNP	G		A
ss6331114	mCV25149389_28929031	CRAMUS	CRAMUS_MOUSE	f	SNP		G	A
ss39420338	mCV25149389	ABI	CRAMUS_MOUSE	f	SNP		G	A
ss147937344	ENSMUSSNP4485664	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss325134040	CHEV_16_31422879	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs3723884					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31241611 () rs orientation: forward

Symbol	Name	Function Class
Bdh1	3-hydroxybutyrate dehydrogenase, type 1	within coordinates
Rr514474	regulatory region 514474	503 bp distal
Rr514475	regulatory region 514475	393 bp distal
Rr514476	regulatory region 514476	1634 bp proximal
Tssr137893	transcription start site region 137893	515 bp downstream
Tssr137894	transcription start site region 137894	485 bp downstream
Tssr137895	transcription start site region 137895	446 bp downstream
Tssr140755	transcription start site region 140755	1415 bp upstream