rs37239996 SNP Detail

Summary

• ID
  rs37239996
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:101076666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAAAACA GAATAAACTG
  AACTTCAAAT GTAAAAGAAT TATTTCAAGA ATAGCTTTTT AATTATTATC AGAAGGGGAA
  GCAATTATTC CATATTCCCC TAATCTCTTC ACTCAAAATA TGACAGAAAT AGTCATTTTT
  ATATGATAAT TTACAAAAAT ATTATTAGTT TTAAATGCAG GGTATTTTAG CCTTTGAAAT
  R
  ATTATATAGT TTGAAAATTT ACCTTCAAAA GTGTTTTTAA GAAAGTGAAC AACTTAACAT
  CTGAGCAAAG AAATATCAGA TACATATGGA TGAATGGAAT TTTTACCAAA CAAGGGCACA
  AAAGATGATC AAACAGAACA CTCTGAGCTT ATGAGACTTT TTCCTTTGAG GGACGTTAAA
  GAAATAAACA TATTCCATAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50785729	NES14211496	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G		A	A	A	A		G
ss323148491	CHEV_9_101101797	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37239996					SNP	G	G	G	G	G	G	A	G	G	G	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50785729	NES14211496	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:101076666 () rs orientation: forward

Symbol	Name	Function Class
Gm67595	predicted gene, 67595	within coordinates
Ppp2r3a	protein phosphatase 2, regulatory subunit B'', alpha	within coordinates
Rr685595	regulatory region 685595	253 bp distal
Rr685596	regulatory region 685596	1178 bp proximal
Tssr91107	transcription start site region 91107	513 bp upstream
Tssr91108	transcription start site region 91108	470 bp upstream
Tssr91109	transcription start site region 91109	387 bp upstream
Tssr91110	transcription start site region 91110	379 bp upstream