rs3724165 SNP Detail

Summary

• ID
  rs3724165
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:100142475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAG ATGGAAACGC CTCCTCACCC
  S
  GGGGCGTGGG CCGCCCTGGC TCCGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C57BL/6J	LG/J	SM/J
ss5100470	WI_WGS_7_90309943	WI	MOUSE	f	SNP	C	G
ss322348741	CHEV_7_107641777	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C57BL/6J	LG/J	SM/J
rs3724165					SNP	C	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:100142475 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19484	CpG island 19484	within coordinates
Gm72028	predicted gene, 72028	19 bp upstream
Rr400469	regulatory region 400469	within coordinates
Rr652131	regulatory region 652131	249 bp distal
Rr652132	regulatory region 652132	828 bp distal
Rr652133	regulatory region 652133	within coordinates
Tssr68123	transcription start site region 68123	51 bp upstream
Tssr68124	transcription start site region 68124	81 bp upstream
Tssr68125	transcription start site region 68125	502 bp upstream
Tssr68126	transcription start site region 68126	561 bp upstream
Tssr68127	transcription start site region 68127	671 bp upstream
Tssr68128	transcription start site region 68128	776 bp upstream
Tssr68129	transcription start site region 68129	1001 bp upstream
Tssr68130	transcription start site region 68130	1623 bp upstream
Ucp2	uncoupling protein 2 (mitochondrial, proton carrier)	90 bp upstream