rs37244854 SNP Detail

Summary

• ID
  rs37244854
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:38219237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGGAGGCAC ACTGGGTTCC CCAGGAGTTG CTGACAATGG
  GCCTTCAGTC AGATGGCCCT GACTTAGGGA GGCTAAGTCT GGAACTGCTG GAGGCCACCT
  R
  GCTGGAGGAG ATAACAAGGC CAGAACAGAG CTGGTTTCCA AAATTCTTTG GTCTCAGCAA
  TTACAATGAA ACTAGGTTAA CAACCAATCA GAATTGTACT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51098415	NES14356942	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37244854					SNP	G	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51098415	NES14356942	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:38219237 () rs orientation: forward

Symbol	Name	Function Class
Cage1	cancer antigen 1	within coordinates
Cpgi5461	CpG island 5461	1343 bp proximal
Riok1	RIO kinase 1	1734 bp upstream
Rr271618	regulatory region 271618	1637 bp distal
Rr281252	regulatory region 281252	763 bp proximal
Tssr119342	transcription start site region 119342	1974 bp upstream
Tssr122123	transcription start site region 122123	1629 bp downstream
Tssr122124	transcription start site region 122124	1664 bp downstream
Tssr122125	transcription start site region 122125	1822 bp downstream
Tssr122126	transcription start site region 122126	1904 bp downstream