rs37246149 SNP Detail

Summary

• ID
  rs37246149
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:59677119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCAACCTTT CCACTGTAAA ATTAATACTA CAGATATCCA
  AGTGCCACAA AGAGACATTG CCAAGCTGCC TTCCACCTTA GATTCTAGTA ACTTCCACCT
  Y
  AGTACACTCA CTCAGCCTGA CACCTCAGGA AAGGGCAGGT GGGGACAGGA GGACCAGTAG
  CTCAAAGCCA TCCTGGTCTA CTAGGCTGGA CTTCCACATA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51516782	NES14634634	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37246149					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51516782	NES14634634	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:59677119 () rs orientation: forward

Symbol	Name	Function Class
Cab39l	calcium binding protein 39-like	1281 bp upstream
Cpgi6560	CpG island 6560	902 bp proximal
Gm45935	predicted gene, 45935	within coordinates
Rr404137	regulatory region 404137	1087 bp upstream
Rr493048	regulatory region 493048	762 bp distal
Rr493049	regulatory region 493049	277 bp proximal
Rr493050	regulatory region 493050	1195 bp proximal
Rr493051	regulatory region 493051	1322 bp proximal
Setdb2	SET domain, bifurcated 2	within coordinates
Tssr125903	transcription start site region 125903	902 bp upstream
Tssr125904	transcription start site region 125904	1277 bp upstream
Tssr129008	transcription start site region 129008	1109 bp downstream
Tssr129009	transcription start site region 129009	1418 bp downstream
Tssr129010	transcription start site region 129010	1433 bp downstream
Tssr129011	transcription start site region 129011	1632 bp downstream
Tssr129012	transcription start site region 129012	1639 bp downstream
Tssr129013	transcription start site region 129013	1641 bp downstream