rs37248197 SNP Detail

Summary

• ID
  rs37248197
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131671306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCACAGGGA CGGTCTTCAC AATGATTTAA
  GGTCGGGGAT GGAGCTGGAA AGCAAGTCTC CACCTCAGCT CCGAGTATTT CAAGGCCCTC
  AGGGCCTCCA GACACCATTC ATGCCCTTTC CCAGGGTGCT CAGAGGTCCA CTGTCCCTCA
  Y
  CTCTAGATCC CCAACCTTCA AAGCAAGAGC CACAGAGCCC AACCCCTCAG GTGGCTTCAA
  TGGTATCCAT TGTCCAAAGG GCTGTGTGGC TTGACCCCCA GCCCCATAAG TAGCAGGACA
  GCAGGCTCAG AGAGGAATCT GCCTGCTGCC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51365840	NES14471118	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	T	C	C		C	C	C		T
ss145481791	ENSMUSSNP6852936	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C				T
ss319975136	CHEV_1_133640145	CHEVERUD	SCREENING_POP	f	SNP										C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs37248197					SNP	C	T	C	C	C	C	T	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51365840	NES14471118	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131671306 () rs orientation: forward

Symbol	Name	Function Class
Rr28486	regulatory region 28486	494 bp proximal
Slc26a9	solute carrier family 26, member 9	454 bp upstream
Tssr8660	transcription start site region 8660	443 bp upstream
Tssr8661	transcription start site region 8661	610 bp upstream