rs3724844 SNP Detail

Summary

• ID
  rs3724844
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:67470152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAT CCACACGTCG GAGGGCTCAT
  Y
  GGCTGGTCCA CACTCTTCAC CGAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5101150	WI_WGS_14_58367699	WI	MOUSE	f	SNP		C	T
ss39212994	mCV25264745	ABI	CRAMUS_MOUSE	f	SNP	C		T	C
ss139643651	ENSMUSSNP3586026	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			C
ss324659622	CHEV_14_67851540	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3724844					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:67470152 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6657	CpG island 6657	448 bp distal
Cpgi6658	CpG island 6658	514 bp proximal
Cpgi6659	CpG island 6659	1478 bp proximal
Ebf2	early B cell factor 2	589 bp upstream
Gm20675	predicted gene 20675	within coordinates
Rr297418	regulatory region 297418	within coordinates
Tssr126327	transcription start site region 126327	479 bp upstream
Tssr126328	transcription start site region 126328	583 bp upstream
Tssr126329	transcription start site region 126329	732 bp upstream
Tssr126330	transcription start site region 126330	1199 bp upstream
Tssr126331	transcription start site region 126331	1885 bp upstream
Tssr126332	transcription start site region 126332	1917 bp upstream