rs3724844 SNP Detail

Summary

• ID
  rs3724844
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:67470152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAT CCACACGTCG GAGGGCTCAT
  Y
  GGCTGGTCCA CACTCTTCAC CGAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5101150	WI_WGS_14_58367699	WI	MOUSE	f	SNP		C	T
ss39212994	mCV25264745	ABI	CRAMUS_MOUSE	f	SNP	C		T	C
ss139643651	ENSMUSSNP3586026	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			C
ss324659622	CHEV_14_67851540	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3724844					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:67470152 () rs orientation: forward

Symbol	Name	Function Class
Ebf2	early B cell factor 2	589 bp upstream
Gm20675	predicted gene 20675	within coordinates
Gm63531	predicted gene, 63531	1793 bp downstream
Rr494420	regulatory region 494420	1758 bp distal
Rr494421	regulatory region 494421	902 bp distal
Rr494422	regulatory region 494422	99 bp proximal
Rr494423	regulatory region 494423	660 bp proximal
Rr494424	regulatory region 494424	894 bp proximal
Rr494425	regulatory region 494425	1111 bp proximal
Rr494426	regulatory region 494426	1758 bp proximal
Tssr126327	transcription start site region 126327	479 bp upstream
Tssr126328	transcription start site region 126328	583 bp upstream
Tssr126329	transcription start site region 126329	732 bp upstream
Tssr126330	transcription start site region 126330	1199 bp upstream
Tssr126331	transcription start site region 126331	1885 bp upstream
Tssr126332	transcription start site region 126332	1917 bp upstream