rs37249919 SNP Detail

Summary

• ID
  rs37249919
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:18709146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACTGAAG GACAGCATTC
  AATGTCTGAA GACTGAGGCA AGTTTCCACT GGCTGTGGTA ATGGCGAGGG TAAGTCAACG
  AACATTCTCG TTGCTCCTAC CTACATTTAT TATTATTATT TTTTTTTAAT GAGAGATTTT
  AAACATCACA AAATGCTCAA GGATGTCATG GTGAACGGCC ATTACAAGTG CAGCTGCATC
  W
  AGATGGCTGG TTGTGTTCAG GCGAACCTAA GTCGGAACGA AGAAATCAAA CTGCACAGGG
  GATGTGGATA GTAAACAAAA TTGCTTCAAG TTCATGGGGA AAAAAAGCCT TTTATTAATG
  ATGAAACAGT GTTATTAGTT AACTAACCCA TTATGAAATT AACTGTGTTA ATGCAATTAG
  AATCTGACCA ATCAGTATAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	PWD/PhJ	WSB/EiJ
ss50685042	NES13607322	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	PWD/PhJ	WSB/EiJ
rs37249919					SNP	T	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50685042	NES13607322	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:18709146 () rs orientation: forward

Symbol	Name	Function Class
Gm23238	predicted gene, 23238	959 bp upstream
Gm50202	predicted gene, 50202	91 bp downstream
Gm59201	predicted gene, 59201	417 bp upstream
Rr544949	regulatory region 544949	428 bp distal
Rr544950	regulatory region 544950	327 bp distal
Rr544951	regulatory region 544951	940 bp proximal
Tssr155454	transcription start site region 155454	1165 bp downstream
Tssr155455	transcription start site region 155455	1133 bp downstream
Tssr155456	transcription start site region 155456	1093 bp downstream
Tssr155457	transcription start site region 155457	342 bp downstream
Tssr155458	transcription start site region 155458	958 bp upstream