rs37250316 SNP Detail

Summary

• ID
  rs37250316
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75415689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTAAATGG AATTCACCAC
  TTTTTTCTAT GAAGAGTGAA TTTCTGGAAG TTTTGGTGTC TGGCCATTAA TCTTTCTTTA
  CTTGCAGTAC TCATCTGCCT GGCTGGTTTC AAGGCAAAAA GTAAAACTAA CCCAAAAAAC
  AGTGGGGTCT CCGGAGGAGA GGCTTAAGGT CCAGAAAATA CTAGGGGGAA AAAAAACGTA
  S
  TCCAAAGATT TTCATCAGAG ATAGTAATAA GAATGTAATT TAAAAAAAAA TGCTGTGAAG
  GCTTGTCAAC ATTTCCCCCT TACATTTGGG AAGGAATAAC ACTGAATATG GCAGAGTTAG
  TGCCAACCAC GTTTGGCTTG CTGAAGCATC CACCTGCCAT GCCTGCCTAC AGAGCACAGC
  GTCTTACTCA TGGTAGCAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51533161	NES14628184	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37250316					SNP	C	C	C	C	C	C	G	C	C	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51533161	NES14628184	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75415689 () rs orientation: forward

Symbol	Name	Function Class
Lcp1	lymphocyte cytosolic protein 1	within coordinates
Rr369874	regulatory region 369874	within coordinates
Rr404213	regulatory region 404213	1267 bp downstream
Rr404214	regulatory region 404214	1442 bp upstream
Tssr4479	transcription start site region 4479	1484 bp downstream
Tssr126623	transcription start site region 126623	1644 bp downstream
Tssr126624	transcription start site region 126624	1606 bp downstream
Tssr126625	transcription start site region 126625	1452 bp downstream
Tssr126626	transcription start site region 126626	1427 bp downstream
Tssr126627	transcription start site region 126627	1345 bp downstream
Tssr126628	transcription start site region 126628	1095 bp downstream
Tssr126629	transcription start site region 126629	404 bp downstream
Tssr126630	transcription start site region 126630	383 bp downstream
Tssr126631	transcription start site region 126631	1329 bp upstream
Tssr126632	transcription start site region 126632	1554 bp upstream
Tssr126633	transcription start site region 126633	1976 bp upstream
Tssr129769	transcription start site region 129769	1646 bp upstream
Tssr129770	transcription start site region 129770	1567 bp upstream
Tssr129771	transcription start site region 129771	152 bp downstream
Tssr129772	transcription start site region 129772	1008 bp downstream