rs3725040 SNP Detail

Summary

• ID
  rs3725040
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:150840125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAACTAC TGTCCTCCAA
  AAGGAGGATG CAGACATTGC CCTCAACCAA GCAGGCTACA AAACGAAACC TGAGTGTCTC
  CCACAGTTTA CTGCCACCCA GTGCAACTAA AAGCTGCTCA GAGACCCAAT GAACAGAGCA
  GGGATTAAAG AGGCAAAAGA TTGGTACAAG GTGGCATCTT TGAAGCCCTC ATAGTCAAAC
  R
  GGGCACAGAG AGAATCAGAC CAGCAATCGA TCAGTGAGCT TAAACAAATG GCTGGTCCGG
  TCACTCAGCC TCTTTTTCCC TCACTACTGT TAGCATTCTG TCTAAGTTCT GCCCCACAGT
  TACCTGGCAA CAGCCAGGTA GGCCTGACCC ACTATAAAAG GGGCTGCTTG CCCCCTCCTC
  ACTCTCTTGC TCTTCCTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J
ss5101348	WI_WGS_5_150172420	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J
rs3725040					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:150840125 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17112	CpG island 17112	1997 bp proximal
Rr625814	regulatory region 625814	460 bp proximal
Rr625815	regulatory region 625815	1967 bp proximal