rs3725110 SNP Detail

Summary

• ID
  rs3725110
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  107
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121126943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCCACCCCC CATGCAGAGG CAGCCAAGAA AATGACTTGT
  CATGCTGGGG TGGGGGGTGG GGGCGGAGCT GGAGCTGGAG GCTGAGCTTA GCGCGcacac
  W
  cacacacaca cactcacaca cTGCGGCAGA CTGCAGCTGC CTGAGCACCC CCCCCCCCGC
  CTCACTGCAG AGACACCTGC CCTCCTGCCC ACTCAGCTTC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss5101418	WI_WGS_2_122262927	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs3725110					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121126943 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D2Dcr65	DNA Segment, Chr 2, Derry C. Roopenian 65			1154 bp proximal
D2Mit445	DNA Segment, Chr 2, Massachusetts Institute of Technology 445			1151 bp proximal
Gm14978	predicted gene 14978			454 bp upstream
Map1a	microtubule-associated protein 1 A			Intron
				Noncoding-Transcript-Variant
Rr373768	regulatory region 373768			1164 bp downstream
Rr563799	regulatory region 563799			998 bp distal
Rr563800	regulatory region 563800			465 bp distal
Rr563801	regulatory region 563801			within coordinates
Rr563802	regulatory region 563802			1044 bp proximal
Tssr19740	transcription start site region 19740			976 bp downstream