rs37251523 SNP Detail

Summary

• ID
  rs37251523
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:111885621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGAACAAT TAACTACCAC
  GTGGTACGGA AGACCGGATG TTTCAGCAGC TCTCTGGACG GAGGCCGGTC CTGAGGCTGA
  AGTTCTAAGC AGCGCAGCGC CACGTCGCGC AGACCCGGGG ACAGGTGTGA CGGGATGGAC
  GGTGCAGTAG TTGCGCTAGC AATCTGCAGG AGAGCAAACC AGAGCCCTGA GTTTCCACAG
  Y
  GGCTTCCCAC GCGACACAGG TGTGAACCTC ATAGCCTCCC AGTCACCTAC ATGGTGTGGT
  GTGCAGTGAG TTTTTCTCCA GTGTTGGACA GATCTTAATT CTCAGCAGCA AACAATATAA
  ACTGCTAATT TTTACCTTTT CCCCCCTTTC TTTTGATAAA GACTTAGGAC AGGCTGATGG
  CTTGGATCTA TCTCTCTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51156735	NES14327360	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	C	T	T	C	C	C	C	C	T
ss145218854	ENSMUSSNP586007	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37251523					SNP	T	C	T	T	C	T	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51156735	NES14327360	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:111885621 () rs orientation: forward

Symbol	Name	Function Class
Map3k1	mitogen-activated protein kinase kinase kinase 1	Intron
Rr486186	regulatory region 486186	1912 bp distal
Tssr124031	transcription start site region 124031	860 bp upstream
Tssr124032	transcription start site region 124032	649 bp upstream