rs37253644 SNP Detail

Summary

• ID
  rs37253644
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72323422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCCCAGCC CCAGAGGCCT
  GCTCACGTAC CCAGGTGCAG GAGCTCCCGG GAGACGGCTT TTCCAATGCC TGTGCCCCCG
  CCGGTGACCA CGGCCACTTG GTTCTTCAGC AACCCGGCCG CTAGGTAGCT CTGACCAGTC
  TTCCAAGAGC CCATGGCCAC AAAGTGTCTG TCTCTGAGTT CTTGCTAAAG CTAGACCACG
  K
  GTTCCTCAGA AGTAGCTCTA TTAGTAGCAG TCCTTGGCCA CGTAACCAAA CAGACCCCGC
  CCCTAAGTCC GCGTGGTCCC GCCTCAGGCC CCGCCCAGGC CCCGCCTTCG CGGCGCGCTA
  GGCCTCCTCC CAGAGCTGGA CCGCTCCTGG CGGCCGCCCG CAGCCGTCTG CATCCTCAGC
  TTCCCTCCTG GGTCCCAGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51274566	NES14276906	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37253644					SNP	T	T	T	T	T	G	T	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51274566	NES14276906	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72323422 () rs orientation: forward

Symbol	Name	Function Class
Cpgi355	CpG island 355	within coordinates
Pecr	peroxisomal trans-2-enoyl-CoA reductase	within coordinates
Tmem169	transmembrane protein 169	132 bp upstream
Tssr114	transcription start site region 114	9 bp downstream
Tssr115	transcription start site region 115	25 bp downstream
Tssr116	transcription start site region 116	42 bp downstream
Tssr7298	transcription start site region 7298	104 bp upstream
Tssr12164	transcription start site region 12164	35 bp upstream
Tssr12165	transcription start site region 12165	within coordinates