rs37253771 SNP Detail

Summary

• ID
  rs37253771
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:80597825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCCACCC TCCCCGGGTC
  CTTTCAGAGT AGGAAGGACT TGCACTTCAA AGTCACATGG GTCGTTCTCA AGGATGCTTC
  TCCTTAGCCC TCAGAGAACC GTTTGTGGAA CTCGTGAGGG ATGACAAAGA CTATGACAAA
  CCTGGCTTAC CCTCAGGTCC CGAGGGAACA CAGACACTTT TTGGCACTCT GGCCACAGAC
  Y
  CAGAGCTTTC CGCATGCCTG GCTTACCCTG AAAAGCCCTT GCCTCTCCAG GAGCGTGACC
  CTGGCAGGGC CCAACAGGAC TAACCTTTGG GTCCTCCGTT GTCTCTAAAT AGAGGAACTC
  GGGGACACTG TAGAAACGCA TGAACTGAAA GTGGTGCTTG TCACTTGGAG TGGTCTCTCT
  GACTGTGGAA GTGAACATAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50521916	NES13678043	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37253771					SNP	T	T	C	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50521916	NES13678043	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:80597825 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10304	CpG island 10304	283 bp proximal
Gm54039	predicted gene, 54039	within coordinates
Rr541547	regulatory region 541547	within coordinates
Tssr152111	transcription start site region 152111	580 bp upstream
Tssr152112	transcription start site region 152112	617 bp upstream
Tssr154031	transcription start site region 154031	170 bp downstream