rs3725511 SNP Detail

Summary

• ID
  rs3725511
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46140043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGAG AGCTCCGGGG AGGTAAGTGC
  Y
  GCTACCTGCC TTCGGTGGCT CTGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss5101823	WI_WGS_9_46483987	WI	MOUSE	f	SNP											C	T
ss12750937	L04149_DA283_3	ROCHEBIO	RPAMM	r	SNP	G			G	G	A	A	G	G		G	A	G	G					G		A	A				G
ss47697290	NES11321032	PERLEGEN	MM_PANEL2	f	SNP		C			C	T		C		T	C		C	C	C	C		C		C			T	C			T
ss136424993	ENSMUSSNP3526600	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		C									C
ss322944004	CHEV_9_46036828	CHEVERUD	SCREENING_POP	f	SNP																	C								T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs3725511					SNP	C	C	C	C	C	T	T	C	C	T	C	T	C	C	C	C	C	C	C	C	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47697290	NES11321032	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46140043 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	within coordinates
Cpgi21701	CpG island 21701	1201 bp proximal
Gm67994	predicted gene, 67994	448 bp downstream
Rr195182	regulatory region 195182	within coordinates
Rr195183	regulatory region 195183	758 bp proximal
Rr206362	regulatory region 206362	within coordinates
Tssr84839	transcription start site region 84839	371 bp downstream
Tssr84840	transcription start site region 84840	31 bp downstream
Tssr84841	transcription start site region 84841	88 bp upstream
Tssr84842	transcription start site region 84842	183 bp upstream
Tssr84843	transcription start site region 84843	206 bp upstream
Tssr84844	transcription start site region 84844	365 bp upstream
Tssr84845	transcription start site region 84845	417 bp upstream
Tssr84846	transcription start site region 84846	456 bp upstream
Tssr84847	transcription start site region 84847	1077 bp upstream
Tssr84848	transcription start site region 84848	1164 bp upstream
Tssr84849	transcription start site region 84849	1256 bp upstream
Tssr84850	transcription start site region 84850	1296 bp upstream
Tssr84851	transcription start site region 84851	1340 bp upstream
Tssr84852	transcription start site region 84852	1359 bp upstream
Tssr84853	transcription start site region 84853	1457 bp upstream
Tssr84854	transcription start site region 84854	1487 bp upstream
Tssr84855	transcription start site region 84855	1506 bp upstream
Tssr84856	transcription start site region 84856	1522 bp upstream
Tssr84857	transcription start site region 84857	1640 bp upstream
Tssr84858	transcription start site region 84858	1659 bp upstream
Tssr89313	transcription start site region 89313	1189 bp downstream
Tssr89314	transcription start site region 89314	1249 bp downstream
Tssr89315	transcription start site region 89315	1263 bp downstream
Tssr89316	transcription start site region 89316	1291 bp downstream
Tssr89317	transcription start site region 89317	1303 bp downstream
Tssr89318	transcription start site region 89318	1325 bp downstream
Tssr89319	transcription start site region 89319	1339 bp downstream
Tssr89320	transcription start site region 89320	1348 bp downstream
Tssr89321	transcription start site region 89321	1370 bp downstream
Tssr89322	transcription start site region 89322	1416 bp downstream
Tssr89323	transcription start site region 89323	1481 bp downstream
Tssr89324	transcription start site region 89324	1531 bp downstream
Tssr89325	transcription start site region 89325	1555 bp downstream
Tssr89326	transcription start site region 89326	1595 bp downstream
Tssr89327	transcription start site region 89327	1716 bp downstream