rs37255736 SNP Detail

Summary

• ID
  rs37255736
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:68790647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGCCAGT GTAGCACAAT
  GGCGACTTCC TTCTTTTGAC TGTAATATGT AAGACCCAAA TGCTTTGTCA GCCTCTTGCA
  GCCCAAGACG TACACAGCCA TGAAGTGGAT CGTTATTGGC ATGCTGTTTC TAAAAGGGAA
  GCTGGACTCC GAGTTGACTT ATTAAGATTT TTCTAGAACA TAGTTGTCCC CTTCCCTTGG
  Y
  TCAGTACTCA GTTTCCAAAG CATTGTTTTC TTCCTTGATT TACATGATGT CTGGGCATTG
  ATCATCTTTA ACCCAGCATT GATAGACAAA GGGATCTCAC TTGGTAGTCA GGCAAACCAG
  AGTCAGGTGC TGGGTGAAGC TTCTAGAATG CACTGGATAA GGCTTTTTTG TCTGTATGGA
  ATACTTTAAG TCTCTCCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50732164	NES14251853	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37255736					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50732164	NES14251853	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:68790647 () rs orientation: forward

Symbol	Name	Function Class
D9Mit158	DNA segment, Chr 9, Massachusetts Institute of Technology 158	1097 bp distal
Rora	RAR-related orphan receptor alpha	within coordinates
Rr682079	regulatory region 682079	782 bp distal
Rr682080	regulatory region 682080	328 bp proximal
Rr682081	regulatory region 682081	1074 bp proximal
Tssr85829	transcription start site region 85829	516 bp downstream