rs37256468 SNP Detail

Summary

• ID
  rs37256468
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27859100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGGGTGT GTGCATTCCT
  GCCCAGGACT GTGGCTGCTT CTACAATGAC CAATATATGC CGGTGAGCGG AGGGGATGGG
  AGGCAGTCTC TAAACAGGCA GTGTGGGTAG AGGGACTGGA GGGACATTCA GAGCTGCTGT
  GCTCTGGGCT TCTGTTCAAG GACTGGGACA CAGAAGGACA CCACCTGCTT GCAGCAGTGG
  Y
  CGCTGTACTG ATCACCCCAG GCTCAGCAGG TCAAATGTGA GAGCTTAGTT CCCAGCAGAT
  CTGGAGGCCA GGAGTCAAAG ACCAGACTCA CTGCACTGAC ATCAAAGTGA TGAAAGGGGA
  CACTGGATTG TCTTAAGAGG ACAATCAAGT CCTTGTCTCT CCCACCCCCT TATGTGGCCT
  CGGTCAGTCC TTGCCTTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51887359	NES14907210	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37256468					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51887359	NES14907210	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27859100 () rs orientation: forward

Symbol	Name	Function Class
Fcgbpl1	Fc fragment of IgG binding protein like 1	within coordinates
Rr170293	regulatory region 170293	within coordinates
Rr380562	regulatory region 380562	1633 bp upstream
Tssr65432	transcription start site region 65432	1998 bp downstream
Tssr65433	transcription start site region 65433	1886 bp downstream
Tssr65434	transcription start site region 65434	1826 bp downstream
Tssr65435	transcription start site region 65435	1679 bp downstream
Tssr65436	transcription start site region 65436	244 bp downstream
Tssr65437	transcription start site region 65437	181 bp downstream
Tssr65438	transcription start site region 65438	1487 bp upstream