rs37257368 SNP Detail

Summary

• ID
  rs37257368
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:7472064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTCCTTC TCGGTTTCTC
  CCCAAGTCCA GGCTCCGCCT GTTTCCCTCC TCCAGGGCAG CCTCAACCCG CTCCTGTCTT
  CTCTGCCTCT GCTACTTCTG CTGAAGGAGG AGGCTCCATG TTGTCCCCTC AGCGAACTGC
  AGCGGTGGCA TCGAGAGGAG CAGGTGAGGC GTCCAATTTT CCCGGGACCC GGTCCGTGGT
  Y
  ACCCACGCTG CCTCCCAGTG CTTCGGCTCC GAGGTGACAA GCCGTCCCTG CCGCCGCCTT
  TTTTGGTGTG GCGACGGGAG GCCGCACCGC CGGGTGTCTC GGCTCGGAAT TCAGGGCCGG
  GGCTCCTGGA GCGGGGAACG TTCCCAGTCT CCGCCGGGAG CCCGCGGCCT CCTGCGGCCT
  GGTGTTCTGG CCCGTCGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50591926	NES13643619	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37257368					SNP	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50591926	NES13643619	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:7472064 () rs orientation: forward

Symbol	Name	Function Class
Atl3	atlastin GTPase 3	within coordinates
Cpgi10560	CpG island 10560	within coordinates
Gm58988	predicted gene, 58988	within coordinates
Rr543688	regulatory region 543688	1694 bp distal
Rr543689	regulatory region 543689	636 bp distal
Rr543690	regulatory region 543690	251 bp distal
Rr543691	regulatory region 543691	165 bp proximal
Rr543692	regulatory region 543692	222 bp proximal
Tssr154754	transcription start site region 154754	668 bp downstream
Tssr154755	transcription start site region 154755	631 bp downstream
Tssr154756	transcription start site region 154756	435 bp downstream
Tssr154757	transcription start site region 154757	237 bp downstream
Tssr154758	transcription start site region 154758	225 bp downstream
Tssr154759	transcription start site region 154759	193 bp downstream
Tssr154760	transcription start site region 154760	101 bp downstream