rs37257823 SNP Detail

Summary

• ID
  rs37257823
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:61005064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGGAGAA GATAACTTTA
  TTTTACTGTT TGGTATATTT AAAGGACAGA GCAGGGTCAC TGGGAGCGTC AGGCCTTATC
  GAGAGCTTTA GGAGTCACAA GGGTGCTCAG AGCTGCTTCA TGAACCATCC TACCCCCCAT
  AGCATAGCAG AAGGCCTTTT CCTCCCGACT GGAAGTGCCC TGCAGTATTC TGCACAGACG
  W
  GAATGCCAAT GGGAGGGTTA ACTGAATCCA AGGTTGCTCT TAAATGTAGT TTTATCCTTA
  ATGAGAGTCC CAGGCAACAG TGACTGTAAT CATTAAAAGT TCTAAGTAAA CAAAGGGAAT
  TCTGCTGCTC TGTGCTGCAA AGACCGCAGG TTACAGTCAC GGTCCTCCTC GTTGTTACAT
  TTACGCCCGT TTCCTCACCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51523313	NES14633423	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37257823					SNP	T	T	T	T	A	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51523313	NES14633423	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:61005064 () rs orientation: forward

Symbol	Name	Function Class
C1qtnf9	C1q and tumor necrosis factor related protein 9	519 bp upstream
Gm34997	predicted gene, 34997	within coordinates
Rr289661	regulatory region 289661	1737 bp proximal
Rr389738	regulatory region 389738	1822 bp downstream
Tssr125961	transcription start site region 125961	466 bp upstream
Tssr125962	transcription start site region 125962	483 bp upstream
Tssr125963	transcription start site region 125963	505 bp upstream