rs37259003 SNP Detail

Summary

• ID
  rs37259003
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:70009769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCAAACTC GTGAAATACT
  GAGTTTCCCT TTGTGAACTA TGAGTTTCAA GATAAAATAC TCAGAGGTTT CCTTTGCAGG
  TGGACTCTCT AGCTTTGGCC TAATTGGGTC CCACATACAG ACCACTCGAT GAAGCAGTAC
  GTGCAACGAC TCCAGTCAGT ACAGGACATA TTTTCTGAAT CAGACACTGG GATAAGCAGC
  R
  TGCAAAGTGA CAATGGGCCA CTCGCCTGTG CAAGAGGTAG TTTGGGAGGA GTAACGTAGA
  AGTTCTGGGG AATAGGAATT GTTTTATGAA TGAGGGGAAA GGATCTTTTC AATTGGCAGT
  GTACCAACAA CTCTCTGTGG TCTGGCTTCC AGATTCGTGA AGGGCCGCTC CAGTGAGACC
  GAGGGAAGGA AGACAGAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52028037	NES15046153	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37259003					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52028037	NES15046153	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:70009769 () rs orientation: forward

Symbol	Name	Function Class
Fam81a	family with sequence similarity 81, member A	within coordinates
Rr196992	regulatory region 196992	632 bp proximal
Rr204777	regulatory region 204777	610 bp proximal
Tssr90397	transcription start site region 90397	588 bp downstream
Tssr90398	transcription start site region 90398	630 bp downstream