rs37259419 SNP Detail

Summary

• ID
  rs37259419
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:66845204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAAGGATA TAAAAATGAT
  TTTATTAAGC ATGTATATTT AACACCATCA CTAGAATAGG TTTGTATAAT TGTTAAGAGT
  TTATATAACT TGTTATAGAA GCAGTTCTCT TGTAAACTAG GCTTCACTGG GAAATGGAAA
  GGTACTTTTC TAAGCCTTTT TATTAGTTTC ACAGTTTCAA GGGAAACACA GATTCCCAAC
  Y
  TATTTCCCTG AGTTCATCTC GATAGTGGAT GTATAAAACA AGACCAGTAA GATCCATTTA
  CCAGTGTCTA TCCCAAATTA TTGTTCAACC AATCACAGGC TGAGATCAAT GATGGGTAAT
  TAGATAGGAC TGTAGGGTGA TGTTACAGTG ACCACAGACA AGTGAAGGAA TCAGAAATCA
  GCACACAATG ACGGACTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50972616	NES13935048	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37259419					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50972616	NES13935048	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:66845204 () rs orientation: forward

Symbol	Name	Function Class
Rr61	regulatory region 61	452 bp proximal
Rr366707	regulatory region 366707	within coordinates
Rr406700	regulatory region 406700	845 bp distal
Rr577871	regulatory region 577871	1828 bp proximal