rs3725956 SNP Detail

Summary

• ID
  rs3725956
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:182781747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATC CTGTCTCAAT AACTCAATAA
  W
  CAAGATAGAC AGCTCCTGAT GAATG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J
ss5102270	WI_WGS_1_184366407	WI	MOUSE	f	SNP			T	A
ss45000296	mCV24863628	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss146408571	ENSMUSSNP1881133	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J
rs3725956					SNP	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:182781747 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1152	CpG island 1152	553 bp proximal
Gm69962	predicted gene, 69962	432 bp upstream
Tlr5	toll-like receptor 5	606 bp upstream
Tssr10570	transcription start site region 10570	588 bp upstream