rs37260085 SNP Detail

Summary

• ID
  rs37260085
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:26385846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTCGGAAG ACTAGGAGCC
  TCCGCACGAG TCCGCCCCGA CCAGGGCAGC GCGCAGCGCA CACTCAGTGT CTCACTCCTC
  TCGGCTTCCC TGGCTCCCAC GGACTCGGTT GGCCTCTCAC CACCCACTCG GGTTCGCCTT
  TCCTGCCTTG GCTTCCCACA CCAGCTCCGC ACCGCCGCCA CAGCCGCGTC CCGACGCTCC
  R
  AACCCTAGCA GGCCGGGATG AAGGGATGCC AGGGTCAGGG ATGCACCCGA AGGAGAAGAG
  AGGCTAAGGC GAGCCGGGGC AGGTGGGGAG TCGCGGGCTG CGGGAGAGGG CGTGTGCGAG
  CGAGCCCCCC GAGAAAGATG CATGTACTCG GCCACCCCGC TGGAAGAAGG ACCGAGGGGG
  CAGGATGCAA CGTGGAGAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51444656	NES14435661	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37260085					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51444656	NES14435661	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26385846 () rs orientation: forward

Symbol	Name	Function Class
A830092H15Rik	RIKEN cDNA A830092H15 gene	within coordinates
Cpgi13015	CpG island 13015	within coordinates
Cpgi13016	CpG island 13016	1475 bp proximal
Nlgn1	neuroligin 1	within coordinates
Rr77454	regulatory region 77454	within coordinates
Tssr32829	transcription start site region 32829	643 bp upstream
Tssr32830	transcription start site region 32830	183 bp upstream
Tssr32831	transcription start site region 32831	109 bp downstream
Tssr32832	transcription start site region 32832	133 bp downstream
Tssr32833	transcription start site region 32833	157 bp downstream
Tssr32834	transcription start site region 32834	207 bp downstream
Tssr32835	transcription start site region 32835	237 bp downstream