rs3726117 SNP Detail

Summary

• ID
  rs3726117
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:75454287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAGAGGGAC CTGGTTACAC TGAGTTCCGC AGAGCTTAGG
  GGGTCTGCTG ATGAGCATCA AGACCACAGA CCTCAGCGGG GCTCTTCACT GTCCCTCACC
  K
  CCAGCATAGT CCACACACTG AGCCTTCGTC CCTTCCCCAG GCCCTGGGTG CTGGATGGGC
  CATATTTCCT GAACCTGAGC TTTATGCCTT CTTCCCACA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5102431	WI_WGS_11_76181448	WI	MOUSE	f	SNP	T							G
ss37157101	NES08477235	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T	T	G	T		T	T	G	T		G
ss38800191	mCV22729109	ABI	CRAMUS_MOUSE	f	SNP		T	T					G		T
ss132438501	ENSMUSSNP3507167	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss323751019	CHEV_11_75376963	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3726117					SNP	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37157101	NES08477235	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75454287 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D11Jcs7	DNA segment, Chr 11, John C. Schimenti 7			184 bp proximal
Rr451206	regulatory region 451206			1542 bp distal
Rr451207	regulatory region 451207			688 bp distal
Rr451208	regulatory region 451208			312 bp proximal
Slc43a2	solute carrier family 43, member 2			Intron
				Noncoding-Transcript-Variant
Tssr102977	transcription start site region 102977			192 bp upstream