rs37263194 SNP Detail

Summary

• ID
  rs37263194
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:87470426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTTAAAA GATCTGAAAC
  ATTTAATTAA GAGAATTTCC AGTCTTTAAA ACTTGAGTGT ATCAACTACC ATAAAATATA
  ATTTAAGCAG TCATCTAAAA CTATGCAAAG TCACTAAACT TGTTTTGTTA CCTTAATTAT
  GTAAGACTGG TTTTCAAAAT ACCTTACCCA CTGAAAACAA AATCCTACTC TTCAAATCAG
  Y
  AGCTCATCTG GGTACTTCGC TTGAAACATG TTAATTTTTA TAGAATATCA TATTCGTCTG
  AATTACAGAC ATTAAGAAAA CAGTGATGTA TGTTTGTTTG TTTGTTTGTT TGTTTGTTTT
  GGGTGACATG GTTTCACTAG ATTGCCAAGG CTGACCTTAA ACCTTTCTAT TCTCCTGCCT
  CGGCCTCTCA AATGTTGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51972224	NES14994226	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37263194					SNP	C	C	C	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51972224	NES14994226	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:87470426 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20765	CpG island 20765	1273 bp proximal
Gm10638	predicted gene 10638	1901 bp upstream
Gm63869	predicted gene, 63869	within coordinates
Rr666882	regulatory region 666882	587 bp proximal
Rr666883	regulatory region 666883	1611 bp proximal
Rr666884	regulatory region 666884	1666 bp proximal
Siah1a	siah E3 ubiquitin protein ligase 1A	within coordinates
Tssr78572	transcription start site region 78572	1649 bp upstream
Tssr78573	transcription start site region 78573	1702 bp upstream
Tssr78574	transcription start site region 78574	1738 bp upstream
Tssr78575	transcription start site region 78575	1792 bp upstream
Tssr78576	transcription start site region 78576	1804 bp upstream
Tssr78577	transcription start site region 78577	1857 bp upstream
Tssr78578	transcription start site region 78578	1881 bp upstream