rs3726390 SNP Detail

Summary

• ID
  rs3726390
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55253723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTTGAAG GAAAGGAGGG
  AGTTTGATAG GCAGTACGTT CTGCAATCAT CATCGCCTAA AGTAAGAAAT TGATCACCTT
  TAACTGTCCC CTCCTATCTG TAGGAGGTGC TGGAGTCAGA CGTGTCAAGT TCGATAACAC
  TTTTGAAAAA CCTCCAGGAG CAGGTGAGTA TGTATGTCTT TTAGAATAAA TCAGTCAGGG
  R
  TTAACTTTGA CTTCATAAGT CTCATCCACA CACTTTGATG ATTCGAATAC TACAAAATTA
  TCTTAGGTGT AAAATAAAAG CCTTATATGC GCTTCATGAA AGTTCAAAAT AATTCATTCA
  GCTCCCAAAG AAATACAGAA AGCTGTTTTT CCCCCATTCA CTTACTTATT TATTTATTTT
  ATTTAGTCAC TTTACATTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss5102704	WI_WGS_14_46102592	WI	MOUSE	f	SNP	G				A
ss52722741	NES15566841	PERLEGEN	MM_PANEL2	f	SNP				A		G	A	A		A	A	G		A
ss139575858	ENSMUSSNP6242664	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
ss324641583	CHEV_14_55635103	CHEVERUD	SCREENING_POP	f	SNP									G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs3726390					SNP	G	G	G	A	A	G	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52722741	NES15566841	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55253723 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6482	CpG island 6482	172 bp distal
Gm63347	predicted gene, 63347	465 bp upstream
Ngdn	neuroguidin, EIF4E binding protein	within coordinates
Rr369830	regulatory region 369830	1072 bp downstream
Rr369831	regulatory region 369831	643 bp downstream
Rr404108	regulatory region 404108	1844 bp downstream
Rr492392	regulatory region 492392	802 bp distal
Rr492393	regulatory region 492393	1099 bp distal
Rr492394	regulatory region 492394	476 bp distal
Rr492395	regulatory region 492395	within coordinates
Rr492396	regulatory region 492396	87 bp distal
Tssr125743	transcription start site region 125743	695 bp downstream