rs3726473 SNP Detail

Summary

• ID
  rs3726473
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:39305799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTATT TTATTAGATC CAGTGTATCT
  R
  GTGTTTGGTT GAGGTCATTG GTCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5102787	WI_WGS_19_39028345	WI	MOUSE	f	SNP	A		G
ss44991187	mCV23365573	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss146374658	ENSMUSSNP5224999	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss325804107	CHEV_19_39391845	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3726473					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:39305799 () rs orientation: forward

Symbol	Name	Function Class
Cyp2c29	cytochrome P450, family 2, subfamily c, polypeptide 29	within coordinates
Tssr156337	transcription start site region 156337	1867 bp downstream
Tssr156338	transcription start site region 156338	1834 bp downstream
Tssr156339	transcription start site region 156339	1808 bp downstream
Tssr156340	transcription start site region 156340	1684 bp downstream
Tssr156341	transcription start site region 156341	1658 bp downstream