rs3726527 SNP Detail

Summary

• ID
  rs3726527
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45234963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAGCTCCCA GGCTAGACAG GTGAGGCACA CCTATTATTC
  TAGCACTTGA AAGGCAGAGA CAAGAGGATT CTGAGTTCTG GGCCAGCCTG GGCTATATAG
  R
  GGGAAAAAAA AGACAAACAA AACAATAGCT TCCAGTGTGG ATTAGCCCCA GAGTGCTAGA
  CTCTGACCAT GGTCTAGCCC ATGCACTTTC TCCTTTGGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5102841	WI_WGS_9_45579402	WI	MOUSE	f	SNP	G	A
ss136409273	ENSMUSSNP4187198	ENSEMBL	ENSEMBL_Sanger	f	SNP			G
ss322943002	CHEV_9_45131748	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3726527					SNP	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45234963 () rs orientation: forward

Symbol	Name	Function Class
Lncbate3	brown adipose tissue enriched long noncoding RNA 3	1586 bp upstream
Rr203898	regulatory region 203898	1759 bp distal
Rr203899	regulatory region 203899	1033 bp proximal
Rr203900	regulatory region 203900	1930 bp proximal
Tmprss13	transmembrane protease, serine 13	within coordinates