rs37265560 SNP Detail

Summary

• ID
  rs37265560
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:74696485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAGGGGT TGAGAGAGCT
  GTTGGCCGCC GCCTTTAACT TGTGCGTGGG GCGGCCATGT CGGCCGGCGA GGTGGAGCGC
  CTGGTGGAGC TGAGCGGCGG GACCGGAGGG GATGAGGAGG AAGAGTGGCT GTATGGCGGT
  ACGGAACTTC CTGTCTGTCT CCCCGGTTCT CTCTGGCCTT CCTCCCAGCG TTTCAGGCCC
  R
  GGCGTCCGAG GCCTCTCGTA TTGGCCCTAA CCGGCCTTGG TTAGGCCGAG TGCGGCCTGC
  TCCCGGCCTT CGCCCGGACC CGCAGGCACT CACCGCGCGG TGGACGCGGG CCAAGGAGGC
  CGGGCAGCCC TGCGTCGCCC TCCTCCGCAC CGCCCGGGCC TCCTCGCTTC TGCGCTCTCT
  ATTCATGCTC TTTATCGATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	PWD/PhJ
ss51157130	NES13841829	PERLEGEN	MM_PANEL2	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	PWD/PhJ
rs37265560					SNP	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51157130	NES13841829	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:74696485 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15972	CpG island 15972	within coordinates
Fip1l1	factor interacting with PAPOLA and CPSF1	within coordinates
Rr399136	regulatory region 399136	323 bp downstream
Rr613306	regulatory region 613306	333 bp distal
Rr613307	regulatory region 613307	within coordinates
Tssr46674	transcription start site region 46674	300 bp downstream
Tssr46675	transcription start site region 46675	266 bp downstream
Tssr46676	transcription start site region 46676	133 bp downstream