rs3726789 SNP Detail

Summary

• ID
  rs3726789
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27835406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAGAATCA GGGTTTCTCC
  ACACATAAGC AGATCAGATC TCAAATTCAA ATAAATCAAG ACCCCAAAGC CACTGCAGGA
  CCCAAAACCC CTATATGATG AGGGATTTTA AAGATAGCAA CAAGCATTTA GTTTTGTTCC
  TCAGAGGCGA GAATCTTCCA AAGTTGCTCC TGGTATCCCA GGGGACCCAA ATGTAGGACT
  W
  GGGAGATGGA GGATGAACTG GGGTTACTAG CAAGCTGGTG TTACCATTTG AGGACTAACC
  TGTTCATTGT GCCCAACAAT GCCTATGCTG ATTGTCCTAG CTAGCCCTAA TTGTCAACTT
  GACATAGCTT AAAGTCATCT GAGAGAACCC TCAATTGCAG AGCTGTCTAA ACCAGGTTGG
  CCTGTGGCCC TGTCTGTGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss5103107	WI_WGS_7_20392199	WI	MOUSE	f	SNP	T		A
ss148632100	ENSMUSSNP2271498	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs3726789					SNP	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27835406 () rs orientation: forward

Symbol	Name	Function Class
Fcgbpl1	Fc fragment of IgG binding protein like 1	within coordinates
Gm21925	predicted gene, 21925	within coordinates
Gm38976	predicted gene, 38976	within coordinates
Rr644170	regulatory region 644170	1750 bp proximal
Rr644171	regulatory region 644171	1831 bp proximal
Tssr65385	transcription start site region 65385	923 bp downstream
Tssr65386	transcription start site region 65386	1123 bp upstream
Tssr65387	transcription start site region 65387	1452 bp upstream
Tssr65388	transcription start site region 65388	1549 bp upstream
Tssr65389	transcription start site region 65389	1605 bp upstream
Tssr71448	transcription start site region 71448	1117 bp downstream
Tssr71449	transcription start site region 71449	1127 bp downstream
Tssr71450	transcription start site region 71450	1144 bp downstream
Tssr71451	transcription start site region 71451	1537 bp downstream