rs37268103 SNP Detail

Summary

• ID
  rs37268103
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37166679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCCTGCC AGATAGAACT
  AGAACCCCAT CCCCCACTCC AGGGACAAGC AGAAACATCC GCCGCCCGAG CAAGTCTCTG
  CGCGTCTTGG CAGCCTCCCT CCCCAGCCCT GCTCACCAGC TGTCCCTAGA GAAGGCGCGA
  AGGAACCAGA CACCAGGAGC CAGGGAGGAC CGCATCTTGA GGCGCCGGCA CTCGAAGCTG
  R
  GACTATGGAG GGTGCAGAGC CGGCGCGCGT CCCGGCCAGC GGCGGCAGCG ATTTAAATGC
  CCCGCCGACT GGCCCGCCCC AGGCAGGCCC ATGGCCAGAG CCTCCGCCCC TTGAACATGA
  CCGGCCTGCC CTCTAGGTCG CGCCGAGTGC AAGTCCTAGC TATCCCTCTG TGCTCACTAG
  CCACTGTTTT CTATGTACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss50674832	NES14008189	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A		A	A		A
ss322906504	CHEV_9_37062968	CHEVERUD	SCREENING_POP	f	SNP										G			A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs37268103					SNP	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50674832	NES14008189	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37166679 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	within coordinates
Gm48081	predicted gene, 48081	115 bp upstream
Rr676656	regulatory region 676656	within coordinates
Rr676657	regulatory region 676657	21 bp proximal
Rr676658	regulatory region 676658	126 bp proximal
Rr676659	regulatory region 676659	345 bp proximal
Rr676660	regulatory region 676660	653 bp proximal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	within coordinates
Tssr88821	transcription start site region 88821	19 bp upstream
Tssr88822	transcription start site region 88822	within coordinates
Tssr88823	transcription start site region 88823	20 bp downstream
Tssr88824	transcription start site region 88824	46 bp downstream
Tssr88825	transcription start site region 88825	61 bp downstream
Tssr88826	transcription start site region 88826	147 bp downstream
Tssr88827	transcription start site region 88827	240 bp downstream
Tssr88828	transcription start site region 88828	263 bp downstream
Tssr88829	transcription start site region 88829	286 bp downstream
Tssr88830	transcription start site region 88830	302 bp downstream
Tssr88831	transcription start site region 88831	347 bp downstream