rs3726844 SNP Detail

Summary

• ID
  rs3726844
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19428782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCAGAGG GAGACATTCC
  CTCTATACTC TCCCCTCATC TTGATATTTG AGAGTAGTGA GGCTCTGGGG GTGTGCTCCT
  AGCCCCTGGG CATGAAGTGT GGCTGTCTAG GGCCCTGTCA CTAGCCCACC GACCCATCTT
  CTCATTGGGC CTAATGAGTC ATGTGTGGGA GTGGTGCCTG CCTCCAGATA ATGCTGAGTT
  Y
  GATGCCAGGA AAAGCTGCAG GCTCGGGGTG TGCCAGAGGC AGTTGAGTTC TGAAGCCTTG
  GCCCGACCCA AGACACAGCT CAAGCCCTAG CCTGCCCCTG TTAGTGGGAG CCCTGCTGAG
  TCCCTGAGAA CTGAGGGGGT GGGAGGAGAA GCCAGCCAGG GGCTCTCCAG CTTCCACCAT
  GACCCCTTTG AGTACCAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss5103163	WI_WGS_7_14737660	WI	MOUSE	f	SNP	C						T
ss48163958	NES11834478	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	C		C	T	T	T	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3726844					SNP	C	T	T	T	C	C	T	C	T	T	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48163958	NES11834478	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19428782 () rs orientation: forward

Symbol	Name	Function Class
Apoe	apolipoprotein E	1252 bp downstream
Cpgi18507	CpG island 18507	1664 bp proximal
Rr155346	regulatory region 155346	1219 bp proximal
Rr167192	regulatory region 167192	1581 bp distal
Rr167193	regulatory region 167193	1181 bp distal
Rr167194	regulatory region 167194	1618 bp proximal
Tssr2112	transcription start site region 2112	1594 bp upstream
Tssr2113	transcription start site region 2113	1619 bp upstream
Tssr2114	transcription start site region 2114	1734 bp upstream
Tssr2115	transcription start site region 2115	1770 bp upstream
Tssr2116	transcription start site region 2116	1845 bp upstream
Tssr2117	transcription start site region 2117	1867 bp upstream
Tssr2118	transcription start site region 2118	1974 bp upstream
Tssr2119	transcription start site region 2119	1983 bp downstream
Tssr64880	transcription start site region 64880	1411 bp upstream
Tssr64881	transcription start site region 64881	1463 bp upstream
Tssr64882	transcription start site region 64882	1507 bp upstream
Tssr64883	transcription start site region 64883	1545 bp upstream
Tssr64884	transcription start site region 64884	1572 bp upstream
Tssr64885	transcription start site region 64885	1651 bp upstream
Tssr64886	transcription start site region 64886	1672 bp upstream
Tssr64887	transcription start site region 64887	1704 bp upstream
Tssr64888	transcription start site region 64888	1923 bp upstream
Tssr70972	transcription start site region 70972	1946 bp upstream
Tssr70973	transcription start site region 70973	1435 bp downstream
Tssr70974	transcription start site region 70974	1481 bp downstream
Tssr70975	transcription start site region 70975	1509 bp downstream
Tssr70976	transcription start site region 70976	1544 bp downstream
Tssr70977	transcription start site region 70977	1592 bp downstream
Tssr70978	transcription start site region 70978	1607 bp downstream
Tssr70979	transcription start site region 70979	1631 bp downstream
Tssr70980	transcription start site region 70980	1641 bp downstream
Tssr70981	transcription start site region 70981	1662 bp downstream
Tssr70982	transcription start site region 70982	1676 bp downstream
Tssr70983	transcription start site region 70983	1709 bp downstream
Tssr70984	transcription start site region 70984	1726 bp downstream
Tssr70985	transcription start site region 70985	1791 bp downstream
Tssr70986	transcription start site region 70986	1824 bp downstream
Tssr70987	transcription start site region 70987	1854 bp downstream
Tssr70988	transcription start site region 70988	1898 bp downstream
Tssr70989	transcription start site region 70989	1937 bp downstream
Tssr70990	transcription start site region 70990	1949 bp downstream
Tssr70991	transcription start site region 70991	1994 bp downstream