rs3726869 SNP Detail

Summary

• ID
  rs3726869
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55253737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGGAGTT TGATAGGCAG
  TACGTTCTGC AATCATCATC GCCTAAAGTA AGAAATTGAT CACCTTTAAC TGTCCCCTCC
  TATCTGTAGG AGGTGCTGGA GTCAGACGTG TCAAGTTCGA TAACACTTTT GAAAAACCTC
  CAGGAGCAGG TGAGTATGTA TGTCTTTTAG AATAAATCAG TCAGGGATTA ACTTTGACTT
  Y
  ATAAGTCTCA TCCACACACT TTGATGATTC GAATACTACA AAATTATCTT AGGTGTAAAA
  TAAAAGCCTT ATATGCGCTT CATGAAAGTT CAAAATAATT CATTCAGCTC CCAAAGAAAT
  ACAGAAAGCT GTTTTTCCCC CATTCACTTA CTTATTTATT TATTTTATTT AGTCACTTTA
  CATTCCGATT GCAGCCACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5103188	WI_WGS_14_46102606	WI	MOUSE	f	SNP	T			C
ss139575861	ENSMUSSNP6601197	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		C
ss324641584	CHEV_14_55635117	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3726869					SNP	T	T	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55253737 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6482	CpG island 6482	186 bp distal
Gm63347	predicted gene, 63347	479 bp upstream
Ngdn	neuroguidin, EIF4E binding protein	within coordinates
Rr369830	regulatory region 369830	1086 bp downstream
Rr369831	regulatory region 369831	657 bp downstream
Rr404108	regulatory region 404108	1858 bp downstream
Rr492392	regulatory region 492392	816 bp distal
Rr492393	regulatory region 492393	1113 bp distal
Rr492394	regulatory region 492394	490 bp distal
Rr492395	regulatory region 492395	within coordinates
Rr492396	regulatory region 492396	101 bp distal
Tssr125743	transcription start site region 125743	709 bp downstream