rs37269231 SNP Detail

Summary

• ID
  rs37269231
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:64440887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGCTTTC TAGAAGAAGT
  TTTCTTTATT TTCAAAACTG ATAGCAATTT CAGGAATTGG AAATACAAGT GAGGGATTGA
  ATTACCTAAA AAGCATTCAA ATGGGTCCAA TACAAGTATG CTTCACAAAC TATTTTAGAG
  CTGGAATAAT ACACAAATGG AATAGGAAAC CAAACAGTAT GATGTTGATT CTGATTATGA
  Y
  GGTAAATTTC CTTTTCATCT TAACAAGGTG TTTTATAGTT TTCAGTTTCT TATGCATGCA
  ATAGACTAGG ATAGCAGTTC TTTGGTGCCT ATGGCATAAA TGTATACCAT GCTCATAAAG
  AACTATCTTC AATAAAGCTG AGAGAGTAAT GTTATGTAAA ACAACCAAAG CCATAAGCAG
  AACATATGTC CTTGTGTACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51323161	NES13758828	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	T	C	C	T	C		C	C	T	T
ss133262253	ENSMUSSNP5877247	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37269231					SNP	C	C	C	C	C	C	C	T	C	C	T	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51323161	NES13758828	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:64440887 () rs orientation: forward

Symbol	Name	Function Class
D6Rck360	DNA segment, Chr 6, Rockefeller University 360	1910 bp proximal
Grid2	glutamate receptor, ionotropic, delta 2	Intron
Rr379493	regulatory region 379493	338 bp upstream