rs37269572 SNP Detail

Summary

• ID
  rs37269572
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69275489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTTCACC GTTTTCGATC
  ACTCCCATCC GACCAGTTTT AGTTGAGGGC CTCTCCACGA TCCGCTGTCA TCATTTAGCA
  GTCCCACTTT TTTCATGACA TACCTTCTTT TTTTTTTTTT TTACTGGTGG AGTAACAAAC
  CCAAGATTAT AAATGGTTGG TATGAGGTGA ATTGCCAGTG CGGTGGAGCT GCTCTTGAAT
  Y
  GTTATTCTCA GTCCTACAAG TAGACTCAGT AGAGCACATC TTAAAATGTT CCCTCTTGCT
  GAGTGTGATG GCACATGCCT TTAATCCAAG AACTCAGAAG GCAGAGGCAG GGGGATCTCT
  GTAAACACCT GGGCAACTTG TTCTAGAGAA TGAGTTCCAG ACCAGTCAGT GAATCACAGT
  GAGACCTTAT ATAAAAATCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51013759	NES14402732	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37269572					SNP	T	T	T	T	T	C	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51013759	NES14402732	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69275489 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4690	CpG island 4690	429 bp distal
Gm47545	predicted gene, 47545	within coordinates
Pole2	polymerase (DNA directed), epsilon 2 (p59 subunit)	520 bp upstream
Rr403319	regulatory region 403319	401 bp downstream
Rr467012	regulatory region 467012	779 bp distal
Rr467013	regulatory region 467013	72 bp distal
Rr467014	regulatory region 467014	503 bp distal
Rr467015	regulatory region 467015	606 bp proximal
Rr467016	regulatory region 467016	698 bp proximal
Tssr113624	transcription start site region 113624	74 bp downstream
Tssr116494	transcription start site region 116494	531 bp upstream