rs37272283 SNP Detail

Summary

• ID
  rs37272283
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58670706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACGGCAG GAGACAAGGA
  GGGACTCTGA GACAAGTCTG ATCTTTTCTA TGGTCCTGCT TCTCTTACTG TGTTTCCCAT
  AGAACCTCTG CCGCCCCATA ATCTATTTGA TCTTCCAAAA GCACAAAACA AAGCCATCAT
  ATTCCAATAA GCCCAGGGCA GAGTTCCTAT TTCATAGTCA GCCTTCCTGA TCACTTCTCA
  W
  TCTGGCTTTC ACTTAGGACT CCAGTCTTAC CACCCAGGAC ATTCAGTCTG AAACTCCACA
  CTCTAGACTT ATCCCCAGGG ACAGACTATT TATTGTCTTT CACAGTTTTT TTTTTCTTTT
  ATACTCATAC CTGATATGAA TACTATAAAA CTATAGACAC AAAACCAGGA TGGTACTGTC
  AAAACAACAA CAACAACAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50903965	NES13492606	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37272283					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50903965	NES13492606	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58670706 () rs orientation: forward

Symbol	Name	Function Class
Pnlip	pancreatic lipase	475 bp downstream
Tssr157285	transcription start site region 157285	1512 bp downstream
Tssr157286	transcription start site region 157286	1465 bp downstream
Tssr157287	transcription start site region 157287	1437 bp downstream
Tssr157288	transcription start site region 157288	517 bp downstream
Tssr159962	transcription start site region 159962	488 bp upstream