rs37274038 SNP Detail

Summary

• ID
  rs37274038
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:50001439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCCTTGG GGCCTTTGGA
  AGCACTGGGC ATGGTTGCCC ACTCCCTTTC AGTCTTCAAT TCCACACTCA TGATCTCAGC
  ACAAGTCAAG AGAAAATGTT CCCTACCACT TTGCCTGGTC CCCCAGGCTG TTCACCATGA
  CAGGGACTGT TTAATATCTG GGTGCACAGG CTCTCCTGAG TCCTATGAAC TCCACAGAGG
  Y
  TGGACTCTGC CACCAGCCTC ACCTGCTTCT TATATTTGCA CCAGGAGATT GACCAGTCAG
  GGTGTGAAAA TCTGCTCTTT GTGGCCTGTG TTAGGCTCAT GAGAAATCTG ATGAGAGTTT
  CACCACCTAA GTCTGCCCCT CTTTATCACA GAGAGACAGT TCCATAGTCT GCAATCTTGT
  AAAACAAGCA GGGGGACTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	NZW/LacJ	PWD/PhJ
ss51109299	NES14348421	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	NZW/LacJ	PWD/PhJ
rs37274038					SNP	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51109299	NES14348421	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:50001439 () rs orientation: forward

Symbol	Name	Function Class
Rr272328	regulatory region 272328	1962 bp proximal
Rr286159	regulatory region 286159	1853 bp distal
Rr286160	regulatory region 286160	536 bp distal