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rs37274194 SNP Detail
Summary
  • ID
    rs37274194
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr10:127724966 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAGGCTCATC TTGTGTCTCT
    GCATCTTGCA CTCTGGAACT ACAAACCAGG ACATTGTGAG CATAGTTTGA AGCTATTGCC
    AACCTGCACT TGGACTGAGG ACACATTACA GGAGAGGACA TGGAGAGCTG GTACCTTCCT
    AATATAGTAG CTGCCCAGGA AGAGGGAAGG GCCGGCCCCA AACATGAAAC ACAAACTGGG
    R
    TCCCAGACAC ACTGTGACCC CCAGAGTTGA TGTGGAGAGG AAATGACTTT ACCCTAAACA
    GGCCTTTCTT GTTAGTTGTG ACTCTTGTTT GTTCTTGTCA ACCCACACAA GTGATGATCA
    AATGGGAAGA ACCTCACCTG AGAAAATGCT TCCACTGGAT TACCCATAGA CATGTCATCC
    ATGGGGCCAT TTTCTTGGTT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
BALB/cByJ
FVB/NJ
LG/J
MOLF/EiJ
NZW/LacJ
PWD/PhJ
SM/J
ss50945985 NES14148150 PERLEGEN MM_PANEL2 f SNP G G G A G A
ss323530336 CHEV_10_127326153 CHEVERUD SCREENING_POP f SNP G A
SNP Consensus Information
SNP Consensus Type
A/J
BALB/cByJ
FVB/NJ
LG/J
MOLF/EiJ
NZW/LacJ
PWD/PhJ
SM/J
rs37274194 SNP G G G G A G A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss50945985 NES14148150 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr10:127724966 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rdh7 retinol dehydrogenase 7 280 bp upstream
Rr226506 regulatory region 226506 1822 bp distal
Rr226507 regulatory region 226507 within coordinates
Rr226508 regulatory region 226508 436 bp proximal
Tssr99826 transcription start site region 99826 435 bp upstream
Tssr99827 transcription start site region 99827 347 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory