rs37274516 SNP Detail

Summary

• ID
  rs37274516
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:11485986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCATTTTCC AAGTACTAAC
  AATATACTTG TGCGCCTAAC TCCTTGGGTT TTAAACCCTA GCATCCTGCA TAGCAACCAA
  TGGTGATGCC CACACCAGCC TCATCCACTC AGTTTTACTT AGCAAACACC TTTTGTGTTT
  CTCCACCGTG AAAAAAAAAT GGTGCACCAA TCCCACGTAT GACAGGTTGG CACTTAACTG
  Y
  AGCCGCTCAA TAGTTTTATC AGCGACTGGG ACACTTCACA ATCGTTTAAT TAGCTACTCA
  AGTCCGATTA GAAAATCCAC CTATTTGTAG TCTTATACTA AAAAGCACCT AGTCTCACCT
  GTCTTAAATC TAGCCTAAGT CCCCGGAACA CGCCGCATAT AAACATTCCT CCCCCCACCG
  CATTATCCCA AAAGATCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50960695	NES14422072	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37274516					SNP	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50960695	NES14422072	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:11485986 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4418	CpG island 4418	504 bp proximal
Rr462902	regulatory region 462902	356 bp distal
Rr462903	regulatory region 462903	within coordinates
Rr462904	regulatory region 462904	618 bp proximal
Rr462905	regulatory region 462905	1728 bp proximal
Tssr3791	transcription start site region 3791	490 bp downstream
Tssr3792	transcription start site region 3792	533 bp downstream
Tssr3793	transcription start site region 3793	726 bp downstream
Tssr115745	transcription start site region 115745	332 bp upstream
Tssr115746	transcription start site region 115746	513 bp downstream
Tssr115747	transcription start site region 115747	565 bp downstream
Tssr115748	transcription start site region 115748	622 bp downstream
Vsnl1	visinin-like 1	within coordinates