rs37275646 SNP Detail

Summary

• ID
  rs37275646
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:99164961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTCCATG CCTAAGACAT
  CAGGACTCTG AGCAGATCTT GGCAGCCTGG ACGCCTTTGG AGAAAAGTTA CCATTTTGTA
  TTGATTTTAA TCTTACCTGG AACCTTGGGC TGGTGGGGGG AGACATGAGT CACATGCATC
  CTCTGGGGTC TCAAGGAATA ACAATCTCTG GCTGACATGG GAGAGTTAGC TTGCTAGGCT
  S
  ACTTCCCACA GGTGGCTCAC AGTGATTTCT GCAGCCTTAC TTGCCAGCTC TAACACTATT
  AGAGATGCTG CTCTCTCATG CAGGAGTGTT TGCAGGCACA GATGATGTCA AGATTCACCC
  CGAGTCCCTC TTGCTTCCTG GGGCTCCCTG CCTGTATCTT CCTCTCAGCT TCCTCACCTC
  CTCTGTGTAT CTCTCACTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
ss51782545	NES14787150	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
rs37275646					SNP	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51782545	NES14787150	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:99164961 () rs orientation: forward

Symbol	Name	Function Class
Foxp1	forkhead box P1	within coordinates
Rr399787	regulatory region 399787	586 bp upstream
Rr406447	regulatory region 406447	1657 bp proximal
Rr635365	regulatory region 635365	73 bp proximal
Rr635366	regulatory region 635366	1973 bp proximal
Tssr57967	transcription start site region 57967	1082 bp upstream