rs37275937 SNP Detail

Summary

• ID
  rs37275937
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43116110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGAAGGCGT CCGAGCGGGA
  CCGGTGCCAT CTACGCTCCT GGTGACTGTC CCCGCCCGCC CGGAGCTCAG CGGCGTCGCC
  GTCACCTGCC TGGCCCGCCA CCTGGTGGCC ACACGTACAT GCACGATCAT CCCGGGTGAG
  AGGGGCTGGG CCTCCTTACT GTCTGTAAGG GAAGTGGAAG ACTTTTCCTT TGCTCCTTTG
  Y
  GGTTTAAGGA AAAGGCCAGA GAGAACTTTA CTCATTTTAG GAAAGCCAAA CGTAACTTTC
  TTTGGGCATT GGTTCTCTCC TTCCATCATG TAAGTCTCAG GGCTTGAACT CAGGTCGTCG
  GGCTCCGTGG CAATTGCCTT TATCTGCTGA ACTACCTCCT GAAACTTCGG ACATCACTGT
  CTTTGAACCT AGAGCAGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51478091	NES13969845	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37275937					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51478091	NES13969845	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43116110 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18932	CpG island 18932	675 bp distal
Cpgi18933	CpG island 18933	within coordinates
Gm39000	predicted gene, 39000	319 bp upstream
Rr400282	regulatory region 400282	655 bp downstream
Rr645966	regulatory region 645966	1822 bp distal
Rr645967	regulatory region 645967	1157 bp distal
Rr645968	regulatory region 645968	584 bp distal
Rr645969	regulatory region 645969	1087 bp distal
Rr645970	regulatory region 645970	395 bp distal
Rr645971	regulatory region 645971	88 bp distal
Tssr66010	transcription start site region 66010	665 bp downstream
Tssr72135	transcription start site region 72135	1096 bp upstream
Vsig10l	V-set and immunoglobulin domain containing 10 like	within coordinates