rs37279033 SNP Detail

Summary

• ID
  rs37279033
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:27751757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCGATGAA GGGATCTTGG
  AGCTCAGTCA GTGTCCACTG GGTTCTGTGA TCTTCAGGAC ACAGCACCAA GGCCTCGCTG
  CTTGAGCACG TGTCTGTTGT GCATCGTCAT GCTGAGTTCC TACACTCAGC AAGAAGTAGC
  AAGCAGGGCA GGGGGAGAAA GCCGGCTCCC TCTTATTAGA AACGGCCCAA AGGAAAAGTT
  Y
  TCTGCAGGCT TCTGGCCTCC CGTTACTGGA GTTCTTCAAC CCCGCTGGCC ACTTTTTAGT
  TCACGCTGTT GCCCCTTTGT CTTTTCGCAG AACTTTGTGT TGAGCACAAA GTTTCACAGA
  GAGTTGAGTC CTTTTAGGCG AGGTGTGAAT CAGGGTGTAT TTTTTATTTT TATTTTTTAT
  AGGCACCGAT ACAGACCTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss51947116	NES14964420	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs37279033					SNP	T	T	T	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51947116	NES14964420	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:27751757 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20220	CpG island 20220	102 bp distal
Eif4ebp1	eukaryotic translation initiation factor 4E binding protein 1	within coordinates
Rr186444	regulatory region 186444	within coordinates
Rr186445	regulatory region 186445	1443 bp proximal
Tssr76776	transcription start site region 76776	1397 bp downstream
Tssr76777	transcription start site region 76777	1359 bp downstream
Tssr76778	transcription start site region 76778	1311 bp downstream
Tssr76779	transcription start site region 76779	1267 bp downstream
Tssr76780	transcription start site region 76780	1220 bp downstream
Tssr76781	transcription start site region 76781	296 bp downstream
Tssr76782	transcription start site region 76782	1017 bp upstream