rs37279397 SNP Detail

Summary

• ID
  rs37279397
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:114860488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTCCCTG AAAAGTCCCC
  GCCCTCATTC CTAGCTGGGG CTACTAAGCG CATGCGCGTC AGAACTATTT GCTTCCCGAA
  GTCTCCTGCT GCTAGTAAGA GGAAGTACTG CAGGGCTGAT GTCGCGACCT TGTGGACTCC
  CGGAGCCTGT CAGGTAAAGC TCTCCGGCTC CAAGCACCGG AGCCTGACCA AGCCGGGCTC
  Y
  GATCATTGCA CAGGCCCTAT CTATCCACCC TGCAGTTCAG GCTCCTCAGG GCTCCCCTCC
  AGCCGGAACT TTGCTCTTCT GCTCCTGGGG ACAGAGTTGG GGTTTTCACC TAACAAGATT
  CACACACGCG CAGGCGTGTC CTCATCTCCC AGGGTCACAG CGTTTCCCTT TTGCCAATCC
  GAGTCACTCT TCAGGAACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51975811	NES14993950	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37279397					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51975811	NES14993950	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:114860488 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21082	CpG island 21082	56 bp distal
D8Mit139	DNA segment, Chr 8, Massachusetts Institute of Technology 139	1203 bp proximal
Gm56821	predicted gene, 56821	763 bp upstream
Nudt7	nudix hydrolase 7	within coordinates
Rr401147	regulatory region 401147	39 bp downstream
Rr670353	regulatory region 670353	96 bp distal
Rr670354	regulatory region 670354	within coordinates
Tssr79531	transcription start site region 79531	151 bp downstream
Tssr79532	transcription start site region 79532	118 bp downstream
Tssr79533	transcription start site region 79533	86 bp downstream